NicheTrans

0.1.0

Contents:

Installation
Tutorial 1: Data pre-processing for SMA data
Tutorial 2: Data pre-processing for STARmap_PLUS data
Tutorial 3: Train NicheTrans on SMA data
Tutorial 3: Visualize results
Tutorial 4: Train NicheTrans* on SMA data
Tutorial 4: Visualize results
Tutorial 5: Train NicheTrans on STARmap PLUS data
Tutorial 5: Visualize results
Tutorial 6: Train NicheTrans* on STARmap PLUS data
Tutorial 6: Visualize results
Tutorial 7: Train NicheTrans on 10x Xenium data
Tutorial 7: Visualize results
Tutorial 8: Train NicheTrans on human lymph node data
Tutorial 8: Visualize results

NicheTrans

Installation
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Installation

The proposed NicheTrans was developed based on pytorch framework. Please refer to https://github.com/ZacharyWang-007/NicheTrans for installation.

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